I used vinylester on the transom, I've been using poly everywhere else (doing stringers/floor too). I only went with vinyl on the transom because it wasn't that much more expensive than poly but had somewhat better mechanical properties. I looked at it like this: My boat made it 20 years and it was made with the cheapest materials possible, if somebody would have taken a few minutes to seal up a few holes it would still be dry and I wouldn't be going through a total rebuild, so I figure using a decent poly and taking the time seal things up correctly will work out just find.
I think the original layup on mine from the factory went something like (outside to in) 3 layers of biax>3/8 inch of bedding goop> 5/8" ply > 3/8" ply > 5/8" ply > two layers of glass on the inside. After I got everything ground down, in the middle of the transom the glass was only about 1/8" thick. It was around a 1/4" on the sides/bottom due to glassing in the coring.
I don't do it for a living so take into conisideration waste from over-estimating the amount of resin needed for the first few layups, as well as what gets left on the cardboard from wetting the fabric out prior to laying it on the transom. I also added about 6 layers of 1708 prior to the actual wood to smooth/strengthen/level things out, none of which were over-saturated with resin. I left my wood with some wiggle room so I had about a 1/4-3/8 inch gap all the way around that I used resin/cabosil to fill in after things cured. I'd guesstimate my transom at about 28 sq. feet (just about a full sheet of plywood), from the people I talked to after the fact they said 7 was about average. Just throwing this out for reference to another diy guy going through the same thing I did this time last year
I was taking quite a few pictures as I was going along, the project kind of got shelved due to work but I'm getting back onto it now. PM me and I'll send you a link to my photobucket if you are interested.